Junior Research Group Data Science for Sepsis

Dr. Ivana Kraiselburd

The Data Science for Sepsis junior group is working to extend the predicton horizon for emergence of Sepsis using ML and DNA sequence data to characterize the human microbiome.

figure> Evaluating the patients microbiome to improve prediction of Sepsis. <figcaption>Schematic View of MicrobiomSpesisPred</figcaption> </figure>

Contact

Girardethaus
Girardetstr. 8
House 8, 2nd floor
45131 Essen

Dr. Ivana Kraiselburd

Projects

Recent Publications - see all...

  1. Dennis Schmiege, Ivana Kraiselburd, Timo Haselhoff, Alexander Thomas, Adrian Doerr, Jule Gosch, Jens Schoth, Burkhard Teichgräber, Susanne Moebus, and Folker Meyer. Analyzing community wastewater in sub-sewersheds for the small-scale detection of SARS-CoV-2 variants in a German metropolitan area. Science of The Total Environment. 2023. [doi] [url]
    BibTeX
    @article{SCHMIEGE2023165458,
      title = {Analyzing community wastewater in sub-sewersheds for the small-scale detection of SARS-CoV-2 variants in a German metropolitan area},
      journal = {Science of The Total Environment},
      volume = {898},
      pages = {165458},
      year = {2023},
      issn = {0048-9697},
      doi = {https://doi.org/10.1016/j.scitotenv.2023.165458},
      url = {https://www.sciencedirect.com/science/article/pii/S0048969723040810},
      author = {Schmiege, Dennis and Kraiselburd, Ivana and Haselhoff, Timo and Thomas, Alexander and Doerr, Adrian and Gosch, Jule and Schoth, Jens and Teichgräber, Burkhard and Moebus, Susanne and Meyer, Folker},
      keywords = {COVID-19, Public health, Small-scale, Single nucleotide variants (SNVs), Wastewater surveillance, Whole genome sequencing}
    }
    
  2. Maren Bormann, Leonie Brochhagen, Mira Alt, Mona Otte, Laura Thümmler, Lukas van de Sand, Ivana Kraiselburd, Alexander Thomas, Jule Gosch, Peer Braß, Sandra Ciesek, Marek Widera, Sebastian Dolff, Ulf Dittmer, Oliver Witzke, Folker Meyer, Monika Lindemann, Andreas Schönfeld, Hana Rohn, and Adalbert Krawczyk. Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5. Frontiers in Immunology. 2023. [doi] [url]
    BibTeX
    @article{10.3389/fimmu.2023.1150667,
      author = {Bormann, Maren and Brochhagen, Leonie and Alt, Mira and Otte, Mona and Thümmler, Laura and van de Sand, Lukas and Kraiselburd, Ivana and Thomas, Alexander and Gosch, Jule and Braß, Peer and Ciesek, Sandra and Widera, Marek and Dolff, Sebastian and Dittmer, Ulf and Witzke, Oliver and Meyer, Folker and Lindemann, Monika and Schönfeld, Andreas and Rohn, Hana and Krawczyk, Adalbert},
      title = {Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5},
      journal = {Frontiers in Immunology},
      volume = {14},
      year = {2023},
      url = {https://www.frontiersin.org/articles/10.3389/fimmu.2023.1150667},
      doi = {10.3389/fimmu.2023.1150667},
      issn = {1664-3224}
    }
    
  3. . Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro. BMC Biology. 2022. [doi] [url]
    BibTeX
    @article{LEETRILLING2022,
      title = {Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro},
      journal = {BMC Biology},
      volume = {20},
      pages = {},
      year = {2022},
      doi = {https://doi.org/10.1186/s12915-022-01468-z},
      url = {https://www.sciencedirect.com/science/article/pii/S0048969723040810},
      author = {}
    }
    
  4. Laura Moyano, Analía Carrau, Silvana Petrocelli, Ivana Kraiselburd, Wolfgang Gärtner, and Elena G Orellano. Bacteriophytochromes from Pseudomonas syringae pv. tomato DC3000 modulate the early stages of plant colonization during bacterial speck disease. European Journal of Plant Pathology. 2020.
    BibTeX
    @article{Moyano2020BacteriophytochromesFP,
      title = {Bacteriophytochromes from Pseudomonas syringae pv. tomato DC3000 modulate the early stages of plant colonization during bacterial speck disease},
      author = {Moyano, Laura and Carrau, Anal{\'i}a and Petrocelli, Silvana and Kraiselburd, Ivana and G{\"a}rtner, Wolfgang and Orellano, Elena G},
      journal = {European Journal of Plant Pathology},
      year = {2020},
      volume = {156},
      pages = {695 - 712}
    }
    
  5. Ivana Kraiselburd, Thomas Brüls, Geronimo Heilmann, Farnusch Kaschani, Markus Kaiser, and Rainer U. Meckenstock. Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation. Environmental Microbiology. 2019.
    BibTeX
    @article{Kraiselburd2019MetabolicRO,
      title = {Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP\_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation},
      author = {Kraiselburd, Ivana and Br{\"u}ls, Thomas and Heilmann, Geronimo and Kaschani, Farnusch and Kaiser, Markus and Meckenstock, Rainer U.},
      journal = {Environmental Microbiology},
      year = {2019},
      volume = {21},
      pages = {1267 - 1286}
    }
    

Team

Photo of Ivana Kraiselburd

Dr. Ivana Kraiselburd

ivana.kraiselburd@uni-due.de
Interests: Bacterial Diversity, Sepsis, and Machine learning & Prediction

Research Assistants

Photo of Ann-Kathrin Dörr

M.Sc. Ann-Kathrin Dörr, Ph.D. Candidate

ann-kathrin.doerr@uk-essen.de
Interests: Time Series Data and 16s rDNA